Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKRFDLRPLKADIFERLEELIEKEMQPNEVAIFMFEVGDFSNIPKSAEFIQSKGHELLNSLRFNQADWTIVVRKKA
2LXR Chain:A ((1-76))
MKRFDLRPLKAGIFERLEELIEKEMQPNEVAIFMFEVGDFSNIPKSAEFIQSKGHELLNSLRFNQADWTIVVRKKA
General information:
TITO was launched using:
RESULT:
Template:
2LXR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27559 for 533 contacts (-51.7/contact) +
2D Compatibility (PS) -7981 + (NN) -1027 + (LL) 0
1D Compatibility (HY) -11200 + (ID) 3750
Total energy: -51517.0 ( -96.65 by residue)
QMean score : 0.466
(partial model without unconserved sides chains):
PDB file :
Tito_2LXR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LXR-query.scw
PDB file :
Tito_Scwrl_2LXR.pdb
: