Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRYDCLNPIPFIRKFMPLSCLHPFGPFETPKEPALNNPLLKAHSSD-----KICLLGPMKSGKTTFALKLAKGFKNP-----VYINCNDMRLNQNILSSWLLKWHLE-KKMDLLILDRIERLDFSLPKLPKIVLIPNYLSHITAPNFSLCYALGLNFKEYISFFKPNTPKNTLFNRFLRDGNALDSLFTENEQEKIL---KKQENIQLAFQAYAPLMAKICSYQSKFVSAFYLYTQLKKELKTSKDTLYKLLHALEKQRIIFLAPNFE--NHKTKLYLCDFALPYSLTPSPSLLNVFENMVFLELYKQFPNYELYAHDNGIFILRNPTSKLALIAHAFPTPHFLEKQLL-WCHKHGFLKIAVVSINAPISANNPPYKHLNFIDFSLDIQSILV |
| 1FNN Chain:A ((2-389)) | -------AIVVDDSVFSPSYVPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFL--VLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVLFGISEEVLIGLPLHEKLFLLAIVRSLKIS-----HTPYITFGDAEESYKIVCEEYGERPRVHSQLWSYLNDLREKGIVETRQNTTLISIGTEPLDTLEAVITKLIKEELR |
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General information:
TITO was launched using:
| RESULT:
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Template: 1FNN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -136296 for 2904 contacts (-46.9/contact) +
2D Compatibility (PS) -37894 + (NN) -14470 + (LL) 816
1D Compatibility (HY) 0 + (ID) 2300
Total energy: -190144.0 ( -65.48 by residue)
QMean score : 0.233
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