Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNTMNSVLECKELALYGGSFDPLHKAHLAIIEQTLELLPFVQLIVLPAYQNPFKKPCFLDAKTRFKELERALKGMPRVLLSDFEIKQERAVPTIESVLHFQKLYRPKTLYLVIGADCLRHLSSWTNAKELLKRVELVVFERIGYE-EIQFKGRYHPLKGIDAP---ISSSAIRASLGV
1KAM Chain:A ((1-160))
---------SKKIGIFGGTFDPPHNGHLLMANEVLYQAGLDEIWFMPNQIP--------DSFHRVEMLKLAIQSNPSFKLELVEMEREGPSYTFDTVSLLKQRYPNDQLFFIIGADMIEYLPKWYKLDELLNLIQFIGVKRPGFHVETPY-----PLLFADVPEFEVSSTMIRERFKS
General information:
TITO was launched using:
RESULT:
Template:
1KAM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -127532 for 1050 contacts (-121.5/contact) +
2D Compatibility (PS) -15948 + (NN) -7104 + (LL) 1224
1D Compatibility (HY) -10800 + (ID) 2150
Total energy: -162310.0 ( -154.58 by residue)
QMean score : 0.560
(partial model without unconserved sides chains):
PDB file :
Tito_1KAM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KAM-query.scw
PDB file :
Tito_Scwrl_1KAM.pdb
: