Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDTPNKDDSIIRFSVSLQQNLLDELDNRIIKNGYSSRSELVRDMIREKLVEDNWVEDNPNDGSKIAVLVVIYDHHQRELNQRMIDIQHASGTHVLCTTHIHMDEHNCLETIILQGNSLEIQRLQLEIGGLRGVKFAKLTKASSFEYNE
2WVB Chain:A ((8-142))
-------DSIIRFSVSLQQNLLDELDNRIIKNGYSSRSELVRDMIREKLVED-----NPNDESKIAVLVVIYDHHQRELNQRMIDIQHASGTHVLCTTAIAMDEHNSLETIILQGNSFEIQRLQLEIGGLRGVKFAKLTKAS------
General information:
TITO was launched using:
RESULT:
Template:
2WVB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55081 for 783 contacts (-70.3/contact) +
2D Compatibility (PS) -14837 + (NN) -8556 + (LL) 572
1D Compatibility (HY) -18000 + (ID) 6250
Total energy: -102152.0 ( -130.46 by residue)
QMean score : 0.548
(partial model without unconserved sides chains):
PDB file :
Tito_2WVB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2WVB-query.scw
PDB file :
Tito_Scwrl_2WVB.pdb
: