Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKKITHQIKALSELVALEHTIFSSMFLLMAMVISSYQKNQTLFFGLETLILCFLALLGARNFAMGFNRLVDRDIDKDNPRTKNRPSVDGRISVKGMVIFSVSNALLFVGVSYFINPLAFKLSLPFLIILGGYSYFKRFSSLAHFVVGLALGLAPIAGSVAVLGDIPL--------WNVFLALGVMLWVAGFDLLYSLQDMEFDKERGLFSIPSQLGEKWCLNLSRLSHLVALICWLCFVKCYHGGLFAYLGLGVSALILLYEQILVARDYKNIPKAFFVSNGYLGVVFFIFIVLDVGFKHA
4OD4 Chain:A ((22-296))
--------------LVRIEHTIFSLPFAYVGALLSRYP------FTLADAILMAAAVVGLRMAGMAYNNIADLDIDRLNPRTAKRPLVVGAVSLREAWALVAAGSAIYFASAALLNTYALLLSPLVLAIALTYPHAKRLHPLPHLHLGIVLGSVVFGGAVAASGDEASSLGEVLRSVPWLYVAAVSLWVAGFDTIYSIMDIDFDRSHGLGSIPALLGPKGALAASLAMHAAAVALFIAGVEAYGLGAIATVSTALTALVIILVQAMAW---LGRVKESFNLNLAVPIIIGAGIIVDML----
General information:
TITO was launched using:
RESULT:
Template:
4OD4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -255870 for 2252 contacts (-113.6/contact) +
2D Compatibility (PS) -28122 + (NN) -17750 + (LL) 2560
1D Compatibility (HY) -15200 + (ID) 4450
Total energy: -318832.0 ( -141.58 by residue)
QMean score : 0.403
(partial model without unconserved sides chains):
PDB file :
Tito_4OD4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4OD4-query.scw
PDB file :
Tito_Scwrl_4OD4.pdb
: