Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKASIYDFTLDELSQLLK----PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEIAHVRESVDGSKKYLFKSLRDNHTFEAVLLKMKDKKIDEETNAVLEGEKYTVCVSCQIGCQVGCSFCFTQKGGFVRDLKASEIIQQALLIKEANNLPIEK----ALNIVFMGMGEPLNNLDEVCKAVEIF--NTGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWPLE---QRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNAKGLLCTIRESKALDIEAACGQLREKKLQQKI |
| 3RFA Chain:A ((17-349)) | -KINLLDLNRQQMREFFKDLGEKPFRADQVMKWMYHYCCDNFDEM-TDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAV--GDQRVETVYIP--------------EDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDM-IDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGD------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3RFA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -211415 for 2646 contacts (-79.9/contact) +
2D Compatibility (PS) -34652 + (NN) -14873 + (LL) 3384
1D Compatibility (HY) -24000 + (ID) 5550
Total energy: -287106.0 ( -108.51 by residue)
QMean score : 0.545
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