Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPDELRAEKSFPSKPYDSLKNKSEFDRVYRKGFKKHNPFFSLFVLDLSKEPPKEKEGFKDPLSCRLKDRNTLCLLGLSVSKKVGNAVKRNLIKRRLRSLVTRHAALCQ-GFALVFVPRSDCY----HLDFWALEKHFLEMLTSIKDYMNKALKDLKKGMTHTHAKQ
1NZ0 Chain:A ((10-117))
----------------ERLRLRRDFLLIFKEGKSLQNEYFVVLFRKNGM---------------------DYSRLGIVVKRKFGKATRRNKLKRWVREIFRRNKGVIPKGFDIVVIPRKKLSEEFERVDFWTVREKLLNLLKRIEG--------------------
General information:
TITO was launched using:
RESULT:
Template:
1NZ0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -88172 for 701 contacts (-125.8/contact) +
2D Compatibility (PS) -11131 + (NN) -5997 + (LL) 2348
1D Compatibility (HY) -10800 + (ID) 1400
Total energy: -115152.0 ( -164.27 by residue)
QMean score : 0.637
(partial model without unconserved sides chains):
PDB file :
Tito_1NZ0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NZ0-query.scw
PDB file :
Tito_Scwrl_1NZ0.pdb
: