Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLEVINGKNYAE--KTAHQAVVVNVGASWCPDCRKIEPIMENLAKTYKGKVEFFKVSFDESQDLKESLGIRKIPTLIFYKNAKEVGERLVEPSSQKPIEDALKALL
2YNX Chain:B ((6-106))
----LNDENFDEVIKKNNKVVVVDFWAEWCGPCRMIAPIIEELAKEYAGKVVFGKLNVDENPEIAAKYGIMSIPTLLFFKNGKVV-DQLVGAMPKEALKERIKKYL
General information:
TITO was launched using:
RESULT:
Template:
2YNX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58173 for 680 contacts (-85.5/contact) +
2D Compatibility (PS) -10708 + (NN) -3385 + (LL) 508
1D Compatibility (HY) -12800 + (ID) 2100
Total energy: -86658.0 ( -127.44 by residue)
QMean score : 0.798
(partial model without unconserved sides chains):
PDB file :
Tito_2YNX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YNX-query.scw
PDB file :
Tito_Scwrl_2YNX.pdb
: