Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRCLTCLKLSFKPLCPNCLNDLPLSLKLRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQGLNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKAT-YGRLRA-NNAVSYAGKSLEFRANNPRNFTFR-GDESLDYFLLDDIITTGTTLKEALKYLKTLNIKAHFAIALCSADE
1TC1 Chain:A ((43-142))
---------------------------------------------------------------------------------PLVLISVLK-----GSFMFTADLCRALCDF-NVPVRMEFICVSSY----------VRM---L-LDTRHSIEGHHVLIVEDIVDTALTLNYLYHMYFTRRPASLKTVVLLDKRE
General information:
TITO was launched using:
RESULT:
Template:
1TC1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56404 for 598 contacts (-94.3/contact) +
2D Compatibility (PS) -8960 + (NN) -1228 + (LL) 7036
1D Compatibility (HY) -6800 + (ID) 700
Total energy: -67056.0 ( -112.13 by residue)
QMean score : 0.562
(partial model without unconserved sides chains):
PDB file :
Tito_1TC1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TC1-query.scw
PDB file :
Tito_Scwrl_1TC1.pdb
: