Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYVVLEGVDGAGKSTQVGLLKDRFK--NA--LFTKEPGGTRMGESLRRIALNENISELARAFLFLSDRAEHIESVIKPALKEKKLIISDRSLISGMAYSQFS----S---LELNLLATQSVLPEKIILLLINKENLKQRLSLKSLDKIENQGIEKLLTIQQKLKTHAYALQEKFGCEVLELDAQKSAKNLHEKIATFIECVV
2PBR Chain:A ((1-193))
MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYREPGGTKVGEVLREILLTEELDERTELLLFEASRSKLIEEKIIPDLKRDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEKNRFE----NKEFLEKVRKGFLELAKE-----EENVVVIDASGEEEEVFKEILRALSGVL
General information:
TITO was launched using:
RESULT:
Template:
2PBR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -72853 for 1429 contacts (-51.0/contact) +
2D Compatibility (PS) -20398 + (NN) -12664 + (LL) 944
1D Compatibility (HY) -10000 + (ID) 3000
Total energy: -117971.0 ( -82.55 by residue)
QMean score : 0.541
(partial model without unconserved sides chains):
PDB file :
Tito_2PBR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PBR-query.scw
PDB file :
Tito_Scwrl_2PBR.pdb
: