Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLVLGISGASGIPLALRFLEKL-PKEIEIFVVASKNAHVVALEESNINLKNAMKDLRPSAT-----------FFNEQDIHASIASGSYGIHKMAIIPASMDMVAKIAHGFGGDLISRSASVMLKEKRPLLIAPREMPLSAIMLENLLKLAHSNAIIAPPMMTYYTQSKTLEAMQDFLVGKWFDSLGIENDLYPRWGMN
3ZQU Chain:A ((6-201))
-RITLAMTGASGAQYGLRLLDCLVQEEREVHFLISKAAQLVMATETDVALPAKPQAMQAFLTEYCGAAAGQIRVFGQNDWMAPPASGSSAPNAMVICPCSTGTLSAVATGACNNLIERAADVALKERRPLVLVPREAPFSSIHLENMLKLSNLGAVILPAAPGFYHQPQSVEDLVDFVVARILNTLGIPQDMLPRWGEQ
General information:
TITO was launched using:
RESULT:
Template:
3ZQU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -149421 for 1490 contacts (-100.3/contact) +
2D Compatibility (PS) -19876 + (NN) -8973 + (LL) 208
1D Compatibility (HY) -14400 + (ID) 3550
Total energy: -196012.0 ( -131.55 by residue)
QMean score : 0.619
(partial model without unconserved sides chains):
PDB file :
Tito_3ZQU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ZQU-query.scw
PDB file :
Tito_Scwrl_3ZQU.pdb
: