Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKSLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTA-----IVYQPLDEKLSLETTLSPNRPTIPRNTQIVFSSKELKEPHSNPIPSLNAPMQKPQNKPSSSQQSPQNFSYPESKLGSKNSKNSLLQPLVTPSKVSPTNEVKTPTNDANPPLKHSSQDQENNLFVAPPTEKTLPNNTSSADASENNESNEN---RDNVEKQAIRDPNIKEFACGKWVYDDENLQAYRPSILKRVDKDKEITTDITPCDYSTAENKSGKIITPYTKISVHKTEPLEDPQTFEAKNNFAILQARSSTEKCKRARARKDGTTRQCYLIEEPLKQAWESEYEITTQLVKAIYERPKQDDQVEPTFYETSELAYSSTRKSEITRNELNLNEKFMEFVEVYEGHYLNDIIKESSEYKEWVKNHVRFKEGVCMALEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV |
2WZP Chain:R ((1-375)) | ---MLEANVYDNFNPNYYNI------SDFSMPNGKKEKRGLPIPKARCQVIN-YELWETGYLYTSSATLTVSVEVGDIVQILFPEVVPIEEALGK---KKKLNLDMVYLVTDVDESNKATLKNYFWAM-------------IESLDVPNAIT--KTTNFAIIDYLIDPNK--------------NNLMSYGYFFN-SSIFAGKATINRKAETSSAHDVAKRIFSKVQFQPTTTIQH-APSETDPRNLLFINFASRNWN----RKRITTRVDIKQSVTMDT----ETIVERSAYNFAVVFVK-NKATDDYTDPPKMYIAKNNGDVID---------YSTYHGDGTDL------------------PDVRTAKTLFY--DRDDHGNPP--ELSTIKVEISPSTIVTRLIFNQNELLPLYV-----NDLVDIWYEGKLYSGYIADRVK----------------------TEFNDRLIFVESGDKPNVI- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2WZP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 112599 for 2864 contacts (39.3/contact) +
2D Compatibility (PS) -38666 + (NN) -3150 + (LL) 7204
1D Compatibility (HY) -12800 + (ID) 3500
Total energy: 61687.0 ( 21.54 by residue)
QMean score : 0.022
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