Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDYKRFKGKHANIVIEIISLLEKGVKKAQEILEKPDAGS---YTQLENSSGDTPIKADLALDKFLEETFLSLENVKSVFSEEKETPVT---KENGSYLIAYDPLDGSSVMEANFLVGTIIGVYEKDY-----------KAQNLVASLYVVFGHKIELVVAL-EEVYRYAFY-Q-NKFHFI-ETIVLENKGKIIAS-GGNQKDFSLGLKKALEGFF-----AENYRLRYSGSMVADVHHVLVKKGGMFSYP------QKKLRKLFEVFPLALMVEKAKGEAFYFDKGVKKRLLDQSVESYHEKSECYLASPHEAQILEKHLKGE |
| 1NUW Chain:A ((23-333)) | ------KARGTGEMTQLLNSLCTAVKAISTAVRKAGIAHLYGIAGSTNVTGDQVKKLDVLSNDLVINVLKSSFATCVLVSEEDKNAIIVEPEKRGKYVVCFDPLDGSSNIDCLVSIGTIFGIYRKNSTDEPSEKDALQPGRNLVAAGYALYGSATMLVLAMVNGVNCFMLDPAIGEFILVDRDVKIKKKGSIYSINEGYAKEFDPAITEYIQRKKFPPDNSAPYGARYVGSMVADVHRTLVYG-GIFMYPANKKSPKGKLRLLYECNPMAYVMEKAGGLAT---TGK-EAVLDIVPTDIHQRAPIILGSPEDVTELLEIYQKH |
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General information:
TITO was launched using:
| RESULT:
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Template: 1NUW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -143311 for 2392 contacts (-59.9/contact) +
2D Compatibility (PS) -30468 + (NN) -14433 + (LL) 560
1D Compatibility (HY) -18000 + (ID) 4150
Total energy: -209802.0 ( -87.71 by residue)
QMean score : 0.455
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