Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGLTFFDKARELTEELEKTQAESIHQAAKLVADSIMNDGIIQAFGSGHSYAAAIEVCGRAGGLIPSKVIMDP---------AGGYYESIEGVGSLLTHRLQAKPNDIFFLISNSGRNPMGIELAEWIKSQGCKLIVVTALDASQTAASRHSSGKLLYEFADVILDNRSVQGDAALELEGLEGKVCGTSSFSAVLLLQQTIYEAVELMLEKGYTPPVYRSANIDGGYEYNFAIEDKFADRIFHL
3CVJ Chain:A ((12-240))
----FFNR---ILSEVQETQEQAIIKGAHLVSEAVMNGGRFYVFGSGHSHMIAEEIYNRAGGLALVTAILPPELMLHERPNKSTYLERIEGLSKSYLKLHQVTNKDVIMIISNSGRNTVPVEMAIESRNIGAKVIAMTSMKHSQKVTSRHKSGKKLYEYADVVLDNGAPVGDAGFQIANSEIYSGATSDSIGCFLAQALIVETLHLLVQQGFEPPVFKSSNVDGADLYNDKIFNEY-------
General information:
TITO was launched using:
RESULT:
Template:
3CVJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -114374 for 1841 contacts (-62.1/contact) +
2D Compatibility (PS) -24348 + (NN) -13900 + (LL) 1336
1D Compatibility (HY) -14800 + (ID) 4300
Total energy: -170386.0 ( -92.55 by residue)
QMean score : 0.529
(partial model without unconserved sides chains):
PDB file :
Tito_3CVJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CVJ-query.scw
PDB file :
Tito_Scwrl_3CVJ.pdb
: