Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LEKKKKFRLFDAVLMAVCVVLVVESAAPAAAIGSSQFFWWIALLILFFLPYGLVSAELGTTYD-DEGGIYDWVKRAFGRKWGARVAWLYWINYPIWMASLAVLFVEVITQIF--PVSFGTPVSILIQ-LIFVWIVVIVSCYPVSDSKWILNIAAFCKVAI--MLCLGVLGIYFAITKGLANDFSGKALLPTFD-LESLSFISVILFNFLGFEVVTTLASDMENPKKQIPQAIIYGGILIAFFYLLAAFGMGAA--IPTSELSTSGGLIDSFIMLIGGVNP----FVIIIGIMFMYTLVANLVSWALGVNYVAMYAAKNKDL-PAVFGKTNPKNDMPTGTSILNGIVASV-LIVAAPLIPNENI-FWAFFALNVVALLGSYILMFPAFLKLRKLDPDRERPFKVPGGKILLYLMTFVPMILLIITLIFSAVP---LNGSSAELNEKIPILIGTIVAVIVGEICIWLAGKRKDKGEIKNEND |
| 4DJI Chain:A ((10-448)) | ---AKQLTLLGFFAITASMVMAVYEYPTFATSGFSLVFFLLLGGILWFIPVGLCAAEMATVDGWEEGGVFAWVSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKWPALNEDPITKTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSG---AIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLAMLL--LMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVLAEIASWIVGPSR-GMYVTAQKNLLPAAFAKMN-KNGVPVTLVISQLVITSIALIILTNTGGGNNMSFLIALALTVVIYLCAYFMLFIGYIVLVLKHPDLKRTFNIPGGKGVKLVVAIVGLLTSIMAFIVSFLPPDNIQGDSTDM-------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4DJI.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -465417 for 3527 contacts (-132.0/contact) +
2D Compatibility (PS) -42520 + (NN) -17257 + (LL) 2848
1D Compatibility (HY) -43600 + (ID) 5500
Total energy: -571446.0 ( -162.02 by residue)
QMean score : 0.324
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