Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMNRVVLVGRLTKDPELRYTPAGVAVATFTLAVNRTFTNQQGEREADFINCVVWRKPAENVANFLKKGSMAGVDGRVQTRNYEGNDGKRVYVTEIVAESVQFLEPRNSNGGGGNNYQSGNNNNNYNSGGNNFGQAPTNNGGFGQDQQQSQNQNYQSTNNDPFASDGKPIDISDDDLPF
3VDY Chain:A ((4-107))
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTRSYE----VNVYVTEVLADTVRFMD--------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3VDY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46141 for 647 contacts (-71.3/contact) +
2D Compatibility (PS) -10677 + (NN) -2920 + (LL) -2408
1D Compatibility (HY) -12000 + (ID) 3150
Total energy: -77296.0 ( -119.47 by residue)
QMean score : 0.632
(partial model without unconserved sides chains):
PDB file :
Tito_3VDY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VDY-query.scw
PDB file :
Tito_Scwrl_3VDY.pdb
: