Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRGQEEIDKEQYQVLFIKERLIPCVLGAVIGDCLGVPVEFKDREYLKQNPIVEMIGYGTYNQPKGTWSDDSSLTFALMESLI-SGYDINRIVNNMVSFMDDGFWTPYGEVFDIGSVTRESLNRYKNGVSVFECGGKDNFDNGNGAIMRIMPLVFY-LGKDFSFGKKN-KITEEVTRITHAHPRSILGSYVYIELLQNLFANMDKKLAYEEMQNYIRKNYSDYPFKDELQYYNNILEGNLYELKESNIKSSGYVVDTLEASIWAFLTTNSYKEAVLKAVNLGGDTDTIAFITGSLAGIYYKMEQIPVNWIDQIAKKEDILNLCNRFIESLIKQ |
| 2YZV Chain:A ((3-298)) | ------------GLKERQDRRLGAFLGLAVGDALGAQVEGLPKGTFP--EVREMKGGGPHRLPPGFWTDDTSQALCLAESLLQRGFDPKDQMDRYLRWYREGY------------ATRRALERYAATGDPYA---GDEAGAGNGPLMRLAPLVLAYENH---P--DLLSLARRAARTTHGAREALEATEVLAWLLREALRGAPKEA-LLALEPFRG-----ADL-HP--ALRRVVEGGFW--EA-PEEGPGYAPGTLAAALWAFARGRDFEEGMRLAVNLGGDADTVGAVYGQLAGAYYGLGAIPGRWLRALHLREEMEALALALYRMSM-- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2YZV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -185711 for 2644 contacts (-70.2/contact) +
2D Compatibility (PS) -28952 + (NN) -4207 + (LL) 1900
1D Compatibility (HY) -9200 + (ID) 3900
Total energy: -230070.0 ( -87.02 by residue)
QMean score : 0.464
|
|
|