Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKITAPRIPDGDLTVYPNDTYFIEDIGEVSEQIFRKTTLTGEIFEHFHLETIIFDGCVFDSVSLVSANLTDVVFKNCDLSNLDLMGAIIHRVRFENCKLIGMNFSDATLRNCVFVDCYADYVAFRYANLKWVAFEAGAYTNSDFSGAQLVDTYLERLDLNKAQFLNCALNGIDLSSCIFESITAMPQDLKGMSIDFSHAPALMPLFGIRVK
2J8K Chain:A ((15-194))
------VPRGS-HMDVEKLRQLYAAGERDFSIVDLRGAVLENINLSGAILHGAMLDEANLQQANLSRADLSGATLNGADLRGANLSKADLSDAILDNAILEGAILDEAVLNQANLKAANLEQAILSHANIREADLSEANLEAADLSGADLAIADLHQANLHQAALERANLTGANLEDANLEGTILEG-------------------------
General information:
TITO was launched using:
RESULT:
Template:
2J8K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -245925 for 1663 contacts (-147.9/contact) +
2D Compatibility (PS) -17363 + (NN) 7809 + (LL) 2220
1D Compatibility (HY) 2800 + (ID) 1600
Total energy: -252059.0 ( -151.57 by residue)
QMean score : 0.295
(partial model without unconserved sides chains):
PDB file :
Tito_2J8K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2J8K-query.scw
PDB file :
Tito_Scwrl_2J8K.pdb
: