Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----MTSEFFSTLLLIIGLLIGFFLAILLILAGIRRFFCSAEEPLKRI-RRYQVWHNRYQFNEEVTSFFTVIGATLLVSLITVQITAIPFQYTVLIFWSSWLFHLLSFWKKIRVPKKMKNEMIQLAGFLLITALYFVGYFAMKSLHFSIIHVADFPGVIQFGIRTYLTICSLF--VASGALIVWQRIYVKLLK
4J1V Chain:A ((9-180))
LRQAVMLPEGEDLNEWIAVNTVDFFNQINMLYGTITEFCTEASCPVMSAGPRYE-----YHWADPIK-----CSAPKYIDYLMTWVQDQLDDETL-------------FPSKIGVP--FPKNFMSVAKTILKRLFRVYAHIYHQ--HFDSVMQLQEEAHLNTSFKHFIFFVQEFNLIDRRELAPLQELIEKLG-
General information:
TITO was launched using:
RESULT:
Template:
4J1V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -207903 for 1101 contacts (-188.8/contact) +
2D Compatibility (PS) -15599 + (NN) -109 + (LL) 2676
1D Compatibility (HY) -8400 + (ID) 1450
Total energy: -230785.0 ( -209.61 by residue)
QMean score : 0.275
(partial model without unconserved sides chains):
PDB file :
Tito_4J1V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4J1V-query.scw
PDB file :
Tito_Scwrl_4J1V.pdb
: