Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKPRIYTMSFASVYPLYIQKAEKKDRTKEEVDEIIFWLTGYDQDSLQQAIDQAIDFETFFAEAPKMNPNASLITGVICGYRVEEIEDKLMQQIRYLDKLVDELAKGKKMEKILRK
3C9P Chain:A ((4-118))
-MSQKLYNMKFAAVYLALIAKVERKGGKAESVHQVTSWLTGYEVSDVLACLDRDVTYGDFFRQAPYYVPERIAITGKICGVRIEEIDDPLMQEIRRLDKLVDWLAKGKTSQQVLEK
General information:
TITO was launched using:
RESULT:
Template:
3C9P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53903 for 853 contacts (-63.2/contact) +
2D Compatibility (PS) -12468 + (NN) -5842 + (LL) 208
1D Compatibility (HY) -11200 + (ID) 2600
Total energy: -85805.0 ( -100.59 by residue)
QMean score : 0.539
(partial model without unconserved sides chains):
PDB file :
Tito_3C9P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3C9P-query.scw
PDB file :
Tito_Scwrl_3C9P.pdb
: