Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MKKLNELSKSDLLLIFQALSDPIRLDIFLCLLKSKE-KRFSGTTYNISKSTMSHHIKLLKEAKLINLRKEGTTHIYSV-NQELVSLISHFFEECGEKDE
1SMT Chain:A ((24-121))
ELQAIAPEVAQSLAEFFAVLADPNRLRLLSLLARSELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQGRHVYYQLQDHHIVALYQNALDHLQEC--
General information:
TITO was launched using:
RESULT:
Template:
1SMT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42105 for 546 contacts (-77.1/contact) +
2D Compatibility (PS) -10036 + (NN) -3968 + (LL) 28
1D Compatibility (HY) -7600 + (ID) 1100
Total energy: -64781.0 ( -118.65 by residue)
QMean score : 0.527
(partial model without unconserved sides chains):
PDB file :
Tito_1SMT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SMT-query.scw
PDB file :
Tito_Scwrl_1SMT.pdb
: