Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MYFVYDIGGTFVKFALMENNGTVKMKDKFPTTAKSAEELVAQMVEKWRPYRTEVKGIAVSCPGVVDTEKGVIYQGGSLLFMHEKNLAEMLARECHVPVVLQNDAKSAALAELWLGVAKNVHSAAILTLGSGVGGGIIMDGKLQSGYHLMAGEVSFMETSFDTKKLRGTFFGRTGSAVELIKRIASKKNLPNKKDGEHVFELINQGDEEANAIFDAYIYELASQILNIQYLIDPEIIAIGGGISAQPVVVERLNDAVAEIKAANPYHAAQPKIVTCHFQNDANLYGALYNFFLQMDAQNKR |
| 2GUP Chain:A ((5-290)) | TIATIDIGGTGIKFASLTPDGKILDKTSISTPE-NLEDLLAWLDQRLSE--QDYSGIAMSVPGAVNQETGVIDGFSAVPYIHGFSWYEALS-SYQLPVHLENDANCVGLSELLAHP--ELENAACVVIGTGIGGAMIINGRLHRGRHGLGGEFGYMTTLAP--AEKLNNWSQLASTGNMVRYVIEKSGH-TDWDGRKIYQEAAAGNILCQEAIERMNRNLAQGLLNIQYLIDPGVISLGGSISQNPDFIQGVKKAVEDFVDAYEEYTVAPVIQACTYHADANLYGALVNWLQEEK----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GUP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -182975 for 2386 contacts (-76.7/contact) +
2D Compatibility (PS) -31133 + (NN) -18111 + (LL) 888
1D Compatibility (HY) -18400 + (ID) 4450
Total energy: -254181.0 ( -106.53 by residue)
QMean score : 0.546
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