Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MQVLVLPENK------DINYIKTVQEVKRFFADFERF-------RMITGLSKKPHL------------------LRNGFLEEPQFEPVAFSARHNKEVILEARWLVEKYTEMLNQMDDLYRTILMECYVERKQDVAVMMDLPYEIAQFKRIKKRAVLELATLMGILVRK
4J1V Chain:A ((9-180))
LRQAVMLPEGEDLNEWIAVNTVDFFNQINMLYGTITEFCTEASCPVMSAGPRYEYHWADPIKCSAPKYIDYLMTWVQDQLDDETLF-PSKIGVPFPKNFMSVAKTILKRLFRVYAHIYHQHFDSVMQ-LQEEAHLNTSFKHFIFFVQEFNLIDRRELAPLQELIEKLG--
General information:
TITO was launched using:
RESULT:
Template:
4J1V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36690 for 870 contacts (-42.2/contact) +
2D Compatibility (PS) -13505 + (NN) -543 + (LL) 324
1D Compatibility (HY) -8000 + (ID) 1100
Total energy: -59514.0 ( -68.41 by residue)
QMean score : 0.445
(partial model without unconserved sides chains):
PDB file :
Tito_4J1V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4J1V-query.scw
PDB file :
Tito_Scwrl_4J1V.pdb
: