Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VKSLSFMRVLEAVRTMLQEKGGLDISIVMRDQVEMPTTMIEMIDQEEEESQTAWKEKYRFAIHHYTNETDLAGVEKIDTLIQTGFTLPEGYKLIAVRHYGKQNLVKENTLIHAKTSFEVSICRELKVKI
4ACV Chain:A ((2-125))
-KSLSFMRVLEAVRTMLQEKGGLDVSIVMRNQVEMPTTMIEMIDQEEE-----WKEKYRFAIHHYTNEQDLAGVEMIDTLIQMGFILPEGYKLVAVRHCGKQNLVKENTLIHAKTSFEVSICREL----
General information:
TITO was launched using:
RESULT:
Template:
4ACV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64148 for 839 contacts (-76.5/contact) +
2D Compatibility (PS) -12752 + (NN) -2143 + (LL) 1108
1D Compatibility (HY) -18000 + (ID) 5550
Total energy: -101485.0 ( -120.96 by residue)
QMean score : 0.415
(partial model without unconserved sides chains):
PDB file :
Tito_4ACV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4ACV-query.scw
PDB file :
Tito_Scwrl_4ACV.pdb
: