Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDYVIIQSMDKEVEEILTDIDYGSFSYDYEKNTSRA-ISFTVNKTKQNAAIFDLVGNEAILTYQGQQFVIKKCTPKSIGGTLSKQITAQHICYTVQDHVQYNVKSGRKKYSIQTVLEFALQDNV-LGFSYEIQGSFPLVELEDLGNKNGLELVNLCLEEFGAILFADNKKLYFYDEKSWYVKTEKQFRYLYNTEEVSVDTNTDNLKTEIKCYGKQKENADKLTGDNKYMAVVTYTSPNEAIYGKRMANAKSDDKITNNDD-LLIFAKKQILDVPETALTISYKGKEPVSERDVWYFIHEPMGFETEVKVTKIKSSHPWSKKFQEIGFSNSRRDMV-RIQTQIANQVKKASVDTNKINSFSSIAMNAYDSRILTEVVGVVDGD |
| 3GS9 Chain:A ((3-339)) | -SDIIVADFWNNEEIL------TDFDDSFESWTENEMWSIEFVAQTCY----SFLDYESSVYFRGQEFVVKQLSHDA---TLSKDIRAPHIYYTCQDGRQDDAITGSF--TLEQCLTHIFTDNRGFSWEIIDPSNILEVQQENFGNNNYLTLIDQLLDDYGVVVIPDNRHLVFPREIY--GAKTENFIRYYNTDEASFDIDTLSLTIGYGVDSNGNNYFSPITYTS-----------PEVEWGIRWQEPVSDERYTVAGNMQR--RLLELQDYPATTGSV-----ILECEGDYVLFIYEPLGIDYDVQIVAYYPF----TIAPEITLSNNSIVSIMAQLAVLG--------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GS9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -31310 for 2081 contacts (-15.0/contact) +
2D Compatibility (PS) -31197 + (NN) -5783 + (LL) 5312
1D Compatibility (HY) -18800 + (ID) 3700
Total energy: -85478.0 ( -41.08 by residue)
QMean score : 0.402
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