Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKIWIDAGHGGKDSGASG--NGLVEKNWVLTVAKQLQTELVKA-GFEVGMTRTNDTFYELSDRAKKANSFKADLFISLHFNA----GGGKGYEDYIYTSVPAATVEIQKIIHKNIITKVTKHGMNDRGMKKANFAVLRETAMDAILLEAGFC--DSTDALILEKKAYQTDYCLGIVSAVQEIFGAMVTKYRAGKYLTSDDAISGTNIKGYLEAGTKVFVYKETEKTLNLTTTKGVPGSWVLKTEVNTGKR
4RN7 Chain:A ((6-178))
---VFIDPGHGGNDKGTESKTSNRYEKDLNLQIAKKLANKLSKQKDIQVVVSRTDDTYISLKDRAILANNSSADVLVSIHLNAEKNGNTATGIETWYRNKATDGSKELAQTVQSTIVSYVK---VRDRGIVENNFEVLRESNMPAILIECGFLTTPSEEQKIINEK-YQDQLAEGIVQGV-----------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4RN7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102794 for 1381 contacts (-74.4/contact) +
2D Compatibility (PS) -17105 + (NN) -3335 + (LL) 4616
1D Compatibility (HY) -14000 + (ID) 3150
Total energy: -135768.0 ( -98.31 by residue)
QMean score : 0.468
(partial model without unconserved sides chains):
PDB file :
Tito_4RN7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RN7-query.scw
PDB file :
Tito_Scwrl_4RN7.pdb
: