Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRLDFSKKTMQDFERDAEVVHATRERSFWRFMLADRR---AVFATSVLILIT------VACIFAFLSPYDPNALSVQDKLMPPNSSHWFGTDDHGRDYLTRVLYGGRVSLLVGVFAMMIAVVVGTLAGTVSGYFGGFIDNIVMRFLDIFMSIPSFFLLMILNAYLKPGISNIIIIIGLLSWMEVARIVRAETLTLKEREFILYSKSSGGGFFHIMFKHIIPNAMPSIVVAASLNVATAILTESALSF-LGLGVQQPNASWGS----MLNNAQGYVGEATYLALFPGLLILMTILS------------FNVLGDVLRK-GLSRRY------------------------------------------------------------------------------------------------------------------------------------------- |
4US3 Chain:A ((10-450)) | GREQWASRLGFILAAMGSAVG---LGNIWRFSYVTGENGGAAFLLVYLGFIALIGIPIVLAEFTIGRRAQSDAVGSFEKLAPGKPWKVAGLMGVAAGFLILSFYGVIAGWILFYLFNYIT---GQLWSAPAEGFGGFFEGFIANP-----TLPLFWQALFMIATI------WIVAIGVKKGIERSNKILMPLLGVLLIALAIYSLTLGG--AKEGLAFLFS---PDWSALKDPGVYLAAISQAFFTLSLGMGALITYGSYVSKDSRLPGAAVSVAGLDTAFAIIAGIMIFPAVFALGLSPSGGPGLVFVVLPDIFDSIRLGPIVGIAFFILLGAAALSSAVSLLEVPVAYFMRKFDWSRKQAAITLGVIITLLGIPSSLSFGVLGEVTIIPGLNIFDSVDFIASSVFLPLGGMIIALFIGWGWKTSDALAESDLTDSVWGKLWILSLRFIAPIAILIVFLSAF |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4US3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -157195 for 2055 contacts (-76.5/contact) +
2D Compatibility (PS) -28759 + (NN) -7592 + (LL) 1596
1D Compatibility (HY) -16400 + (ID) 2850
Total energy: -211200.0 ( -102.77 by residue)
QMean score : 0.234
|
|
|