Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---MYEKVEKIINDWDPIELFPLAPKDEYSQEINKIISIVQENPNIDMNVLGKGIRKIFIDSFGENLIFKNNEDEIAEKILAL-----
1U84 Chain:A ((6-86))
GQQLNRLLLEWIGAWDPFGL----GKDAYDVEAASVLQAVYETE--DARTLAARIQSIYEFAFDEPIPFPHCL-KLARRLLELKQAAS
General information:
TITO was launched using:
RESULT:
Template:
1U84.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31712 for 507 contacts (-62.5/contact) +
2D Compatibility (PS) -7934 + (NN) -6317 + (LL) 360
1D Compatibility (HY) -6000 + (ID) 1050
Total energy: -52653.0 ( -103.85 by residue)
QMean score : 0.732
(partial model without unconserved sides chains):
PDB file :
Tito_1U84.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1U84-query.scw
PDB file :
Tito_Scwrl_1U84.pdb
: