Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKASEHFFYVLKCSDNSYYGGYTTDVLRREAEHNAGIRCKYTKT--RRPVKVIHFEKFETRSEATKAEAAFKKLSRKNKDAYLIQREEESE
1YWL Chain:A ((1-84))
MENKKSHYFYVLLCQDGSFYGGYTTEPERRLTEHNSGTGAKYTRLAKRRPVIMIHTEKFETRSEATKAEAAFKKLTRKQKEQYL--------
General information:
TITO was launched using:
RESULT:
Template:
1YWL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4403 for 482 contacts (-9.1/contact) +
2D Compatibility (PS) -9093 + (NN) -4322 + (LL) 812
1D Compatibility (HY) -5600 + (ID) 2700
Total energy: -25306.0 ( -52.50 by residue)
QMean score : 0.452
(partial model without unconserved sides chains):
PDB file :
Tito_1YWL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YWL-query.scw
PDB file :
Tito_Scwrl_1YWL.pdb
: