Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKMLKKGTAVLFVMIMAVMLVACGDKEETKTYTLSQNGVDSKLTYTYKGDKVTKQTAENTMSYASLGVASKEDAEKMLKATSDKFQGIDGLKEKIEYKDDKAIETLEVDYTKISSEDMNKIPGMSSN-GDTSKGISMEESAKMLESQGYKEVSK
2JOE Chain:A ((2-131))
-----------------------GDKEESKKFSANLNGTEIAITYVYKGDKVLKQSSETKIQFASIGATTKEDAAKTLEPLSAKYKNIAGVEEKLTYTDTYAQENVTIDMEKVDFKALQGISGINVSAEDAKKGITMAQMELVMKAAGFKEVK-
General information:
TITO was launched using:
RESULT:
Template:
2JOE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 19047 for 906 contacts (21.0/contact) +
2D Compatibility (PS) -13759 + (NN) -3210 + (LL) 3296
1D Compatibility (HY) -8800 + (ID) 2550
Total energy: -5976.0 ( -6.60 by residue)
QMean score : 0.330
(partial model without unconserved sides chains):
PDB file :
Tito_2JOE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JOE-query.scw
PDB file :
Tito_Scwrl_2JOE.pdb
: