Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MITFDQLDTELQALENPNTIKIFRNHGCPDSLDLYGLKIGDLKKIIRREKLTKNHELAVKLIESNNSDLIYLGLLAINPNKITTEQIEKWNIAFRETWSQLTFGLA-SIVSKRDDALLFAKTWIESDYDLTKSMGWQIYSEHINNLP-------EAETLLQRAKETLQTETNRTRYSMNGFIITCGIYKDDLHEKAMEAAKSVGKVHVNLGNTACKVPDAISYIEKARNRTK
3ZBO Chain:A ((6-230))
SMDFKTVMQELEALGKERTKKIYISNGAHEP--VFGVATGAMKPIAKK--IKLNQELAEELYATGNYDAMYFAGIIADPKAMSESDFDRWIDGA--YFYMLSDYVVAVTLSESNIAQDVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISYVPLHEKAVEIAKEVGIVEVKRDNKKSSLLNASESIQKELDRG-
General information:
TITO was launched using:
RESULT:
Template:
3ZBO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -109028 for 1750 contacts (-62.3/contact) +
2D Compatibility (PS) -23340 + (NN) -11572 + (LL) 536
1D Compatibility (HY) -10000 + (ID) 3150
Total energy: -156554.0 ( -89.46 by residue)
QMean score : 0.582
(partial model without unconserved sides chains):
PDB file :
Tito_3ZBO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ZBO-query.scw
PDB file :
Tito_Scwrl_3ZBO.pdb
: