Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLDKSVPHISVIMVNHDATNYPEFHLPAGYSFCFYKDGLEEDWCRLQLETGQV-----LSMDSIRARFETEFGNEK----EKLTKRCIFVKAPNGEIIGTAMLWDGNTF----GKIESRIHWVAVLDSHGGKGIAKALLSKILGL---NKSKFVYLTTQTGSYQAIYLYRKFGFEKYVGKTPENWKTVNFQEEKETAWQIIENKIAEHQA
1TIQ Chain:A ((2-174))
----------------------------SVKMKKCSREDLQTLQQLSIETFNDTFKEQNSPENMKAYLESAFNTEQLEKELSNMSSQFFFIYFDHEIAGYVKVNIDDAQSEEMGAESLEIERIYIKNSFQKHGLGKHLLNKAIEIALERNKKNIWLGVWEKNENAIAFYKKMGFVQTGAHS-F-----YMGDEEQTDLIMAKTLILE---
General information:
TITO was launched using:
RESULT:
Template:
1TIQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68046 for 1065 contacts (-63.9/contact) +
2D Compatibility (PS) -17408 + (NN) -7109 + (LL) 2380
1D Compatibility (HY) -4400 + (ID) 1600
Total energy: -96183.0 ( -90.31 by residue)
QMean score : 0.436
(partial model without unconserved sides chains):
PDB file :
Tito_1TIQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TIQ-query.scw
PDB file :
Tito_Scwrl_1TIQ.pdb
: