Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEQENEQEWIGGRNPVLEVLRSDRDIHKIYVQEGSQKGVLKQVL-TLAKERKIQVQFVPKQKIEKVVSG-AHQGVAAQVAAYQYAELDDLFAAAEAKDEMPFFIILDELEDPHNLGSIMRTADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKRGLWIFGTDAKGSSDYRTMDVDMPLAIVIGSEGFGMSRLVREKCDFLVHLPMRGKVTSLNASVAASLLLYEVYRKRFPLEK
1IPA Chain:A ((23-263))
-RDSQRRFLIEGAREIERALQAGIELEQALVWEGGLNPEEQQVYAAL-----LALLEVSEAVLKKLSVRDNPAGLIALAR-MPERTLEEYRP-----SPDALILVAVGLEKPGNLGAVLRSADAAGAEAVLVA-GGVDLYSPQVIRNSTGVVFSLRTLAA-SESEVLDWIKQHNLPLVATTPHAEALYWEANLRPPVAIAVGPEHEGLRAAWLEAAQTQVRIPMQGQADSLNVSVSAALLLYEALRQRLL---
General information:
TITO was launched using:
RESULT:
Template:
1IPA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -156440 for 1888 contacts (-82.9/contact) +
2D Compatibility (PS) -25274 + (NN) -7398 + (LL) 1888
1D Compatibility (HY) -11200 + (ID) 2800
Total energy: -201224.0 ( -106.58 by residue)
QMean score : 0.504
(partial model without unconserved sides chains):
PDB file :
Tito_1IPA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IPA-query.scw
PDB file :
Tito_Scwrl_1IPA.pdb
: