Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKNWYVVHTYSGYENKVKANLEKRVESMGMSDKIFRVIVPEEEETEVKNGKTKTIKRKVFPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTPLLPEEADRILKSMGMVEK-------RAEADFEIGETVMVKEGPFADFSGKVDEMDNDKGKAKVMVNMFGRETPVEVDFNQIEKL
2LQ8 Chain:A ((3-176))
MKKKWYIVLTMSGYEEKVKENIEKKVEATGIKNLVGRIVIP------IRGGQRRK-SEKLFPGYVFVEMIMNDEAYNFVRSVPYVMGFVSSGG---QPVPVKDREMRPILRLAGLEEYEEKKKPVKVELGFKVGDMVKIISGPFEDFAGVIKEIDPERQELKVNVTIFGRETPVVLHVSEVEKI
General information:
TITO was launched using:
RESULT:
Template:
2LQ8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67216 for 1219 contacts (-55.1/contact) +
2D Compatibility (PS) -18375 + (NN) -7081 + (LL) 548
1D Compatibility (HY) -17600 + (ID) 3600
Total energy: -113324.0 ( -92.96 by residue)
QMean score : 0.582
(partial model without unconserved sides chains):
PDB file :
Tito_2LQ8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LQ8-query.scw
PDB file :
Tito_Scwrl_2LQ8.pdb
: