Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKGKKYQDALKQIDANKVYTAEEAVELAKKI---DFAKFDATVEVAFRLGVDPKKADQQIRGAVVLPNGTGKTQRVLVFAKGEKAKEAEAAGADYVGESEFVEKIN-QGWFDFDVIVATPDMMGEVGKLGRVLGPKGLMPNPKTGTVTMDVTKAVNEIKAGKVEYRVDKAGNVHAAIGKVSFDAAKLVENFRTVNDVLQKAKPAAAKGTYVKNLSVTTTFGPGIKVDPASL
3QOY Chain:A ((1-232))
MARRGKKYIEASKLVDRNKRYTLEEAVDLLKKMEEVLQRRFDETVELAMRLNVDPRYADQMVRGSVVLPHGLGKPIKVVVFAEGEYAKKAEEAGADYVGGDELINKILKEEWTDFDVAIATPEMMPKVAKLGRILGPRGLMPSPKTGTVTTNVEQAIKDAKRGRVEFKVDKAGNVHMPVGKISFEKEKLIDNLYAAIDAVVRAKPPGAKGQYIKNMAVSLTMSPSVKLDINE-
General information:
TITO was launched using:
RESULT:
Template:
3QOY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -88743 for 1814 contacts (-48.9/contact) +
2D Compatibility (PS) -25333 + (NN) -16437 + (LL) 176
1D Compatibility (HY) -20000 + (ID) 6400
Total energy: -156737.0 ( -86.40 by residue)
QMean score : 0.619
(partial model without unconserved sides chains):
PDB file :
Tito_3QOY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QOY-query.scw
PDB file :
Tito_Scwrl_3QOY.pdb
: