Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALNIEEIIASVKEASVLELNDLVKAIEEEFGVTAAAPVAVAAA-------GGAAAEQTEFTVELASAGDSKIKVIKVVREITGLGLKEAKELVDNAP---KALKEGIAKDEAEEIKAKLEEVGANVEVK
1DD3 Chain:A ((2-128))
---TIDEIIEAIEKLTVSELAELVKKLEDKFGVTAAAPVAVAAAPVAGAAAGAAQEEKTEFDVVLKSFGQNKIQVIKVVREITGLGLKEAKDLVEKAGSPDAVIKSGVSKEEAEEIKKKLEEAGAEVELK
General information:
TITO was launched using:
RESULT:
Template:
1DD3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32985 for 763 contacts (-43.2/contact) +
2D Compatibility (PS) -13015 + (NN) -6150 + (LL) 528
1D Compatibility (HY) -12000 + (ID) 3750
Total energy: -67372.0 ( -88.30 by residue)
QMean score : 0.638
(partial model without unconserved sides chains):
PDB file :
Tito_1DD3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DD3-query.scw
PDB file :
Tito_Scwrl_1DD3.pdb
: