Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDALFNYKEFVRLSHEGNIKYEKLKVPKHTDLVDTASQRNNHVYLIVEGFVSISMNPQSN--SIYTVLGKGSFVNYYSLFQ-GNVDDFLFTAISPCTIYKYSFKDLEYFLSMFPE-NFGFQFFIMRDLARHAFFKSLFAETSSSDKLELSFSNMGKLHGTLYEKDSVILPKEMRTSTIAAYSNLSKSSFYKQLTLLKEHGKIWKKGKEWVVKDKGLYNYVKVRQFDD
1O3T Chain:A ((2-200))
----PTLEWFLSHC-------HIHKYPSKSTLIHQ-GEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTHPDGMQIK--ITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYG--------------
General information:
TITO was launched using:
RESULT:
Template:
1O3T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87753 for 1377 contacts (-63.7/contact) +
2D Compatibility (PS) -20647 + (NN) -1260 + (LL) 1840
1D Compatibility (HY) -13200 + (ID) 1800
Total energy: -122820.0 ( -89.19 by residue)
QMean score : 0.470
(partial model without unconserved sides chains):
PDB file :
Tito_1O3T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1O3T-query.scw
PDB file :
Tito_Scwrl_1O3T.pdb
: