Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKLTKGLGILLASSLVLGLAACGGGSDDKALSTEKITIGTTAGPHQQIAEEVQKLAK-KDGLEIKIKTFDDYNTPNTALNDGDLDANNYQTIPFLEQQKKDKGYKLDVAFKTVAFPMGIYSNDIKDLKNLKKGDKIAVPNDPSNEYRGLKLFEDAGVIKLKDGV---EEKATKKDIAENPLDLEIVELEASQIPAQLDEVAAAAINTNFAMGAGLSINKDAIYHEPTKDNPYPNVFVVRSANKDDEVVKTLEKYYHSDEVKAFIEKEFNGSVVPAF |
4QHQ Chain:A ((2-241)) | ------------------------------------IKVGTVAGPDSEVWQVVQKVAKEKEGLNVKVIEFNDYVQPNAALDSGDLDANSFQHQPYLDSQVKQRGYKIVSAGLTYISPIGVYSKKFKSLKDLPQGAKLAVPNDPSNENRALLLLQTQGVIKLKAGAGTGGNNATVLDIAENPKKLKISELDAAQLPRVLSDVDAAVINTNYALAANLQPTKDAIALE-SLTSPYANLIAVRAKDKDQPWVKKLVKAYQSPEVKEFIKKQFKGSMVASF |
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General information:
TITO was launched using:
| RESULT:
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Template: 4QHQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -56966 for 2047 contacts (-27.8/contact) +
2D Compatibility (PS) -25583 + (NN) -11978 + (LL) 1736
1D Compatibility (HY) -18800 + (ID) 6100
Total energy: -117691.0 ( -57.49 by residue)
QMean score : 0.575
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