Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVKTWEEFLKQEAKQPYFIELMEAVKDARAKGNVYPSEEDMFSCFRLCPYNQVKVVILGQDPYHGPGQAHGLSFSVQKDVRIPPSLRNIYKELKTDLD-IEPADHGYLAKWAEQGVLLMNTSWSVEEGKAGSHKKLGWATFTDHVLEELNNYDKPLVFILWGNHAIKAASGITNPQHLIIKGVHPSPLAASRGFFGSKPFSKTNAFLEEHERKPIDWDLNEQ
1OKB Chain:A ((6-220))
--ETWRRELAAEFEKPYFKQLMSFVADERSRHTVYPPADQVYSWTEMCDIQDVKVVILGQDPYHGPNQAHGLCFSVQKPVPPPPSLVNIYKELCTDIDGFKHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKDRGWETFTDAVIKWLSVNREGVVFLLWGSYAHKKGATIDRKRHHVLQAVHPSPLSAHRGFLGCKHFSKANGLLKLSGTEPINW-----
General information:
TITO was launched using:
RESULT:
Template:
1OKB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102330 for 1744 contacts (-58.7/contact) +
2D Compatibility (PS) -23173 + (NN) -11399 + (LL) 644
1D Compatibility (HY) -21200 + (ID) 5400
Total energy: -162858.0 ( -93.38 by residue)
QMean score : 0.714
(partial model without unconserved sides chains):
PDB file :
Tito_1OKB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OKB-query.scw
PDB file :
Tito_Scwrl_1OKB.pdb
: