Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VKKLVAWFNGLSKMWKVVVIIGAVFVVIIALTTGEDEGEQTKTKKDSNKVVKTASRPKLSTKDLALIKADLAEFEARELSSEKILKDTIKEESWSDLDFANDNINQMIGTMKRYQQEILSIDAIKRSSEASADTEAFKKIFKEWSEFKIERIQVTIDLLNGKKDSEAVFKKTYPNQIIFKKVRTNKLQTALNNLKVGYELLDSQK
2XL4 Chain:A ((26-172))
-------------------------------------------------------RPKLSTKDLALIKADLAEFEARELSSEKILKDTIKEESWSDLDFANDNINQMIGTMKRYQQEILSIDAIKRASEASADTEAFKKIFKEWSEFKIERIQVTIDLLNGKKDSEAVFKKTYPNQIIFKKVRTNKLQTALNNLKVGYELLD---
General information:
TITO was launched using:
RESULT:
Template:
2XL4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23020 for 1032 contacts (-22.3/contact) +
2D Compatibility (PS) -15968 + (NN) -8467 + (LL) 4964
1D Compatibility (HY) -18800 + (ID) 7300
Total energy: -68591.0 ( -66.46 by residue)
QMean score : 0.484
(partial model without unconserved sides chains):
PDB file :
Tito_2XL4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2XL4-query.scw
PDB file :
Tito_Scwrl_2XL4.pdb
: