Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQNDMYNNIRLSVIQLIDSKKENLKENNIKLTIIKNEKDGYVVELDNDKCMAEIVVEEPTYTPYRYISFEVVSLMDGKVKIIYSWYDDE---TSQWSDIEKELNKGIQFLNNFKTMEQ
3DOC Chain:A ((302-333))
-------------------------------------------------------------------------VMDGTMVRILSWYDNEWGFSSRMSDTAVALGK-------------
General information:
TITO was launched using:
RESULT:
Template:
3DOC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 933 for 85 contacts (11.0/contact) +
2D Compatibility (PS) -3297 + (NN) -2161 + (LL) 6544
1D Compatibility (HY) -2800 + (ID) 700
Total energy: -1481.0 ( -17.42 by residue)
QMean score : 0.445
(partial model without unconserved sides chains):
PDB file :
Tito_3DOC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DOC-query.scw
PDB file :
Tito_Scwrl_3DOC.pdb
: