Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LKKLTYVIITGLVLVFIAGAFWITNSTNQSDQKATQTEPIKKISPANVKTISSEAKKTLNSLASSGADKASISDLKQLIKELKSYPTEKNDSGVYLQNLTACLEAVKSYTTGKADEKTLGKVYPAFLASEQKLSAIEKTNQYDWFYAAAATNQQGLKEKGVVTLTMVGDNSFGTYPETPEHLKFDNVFQKNNGNNTYVYKNCLPWFKSDDYTIINAESAFTNATK-AENKMW-RIKSDPAHVAFLPASGVDAANLANNHTMDYFQVGYDDTLKAFKENNIPVFNAD-------------APLETTIKGMKTVLLGYDCRMSQQ------S------PAYLERIVKDVKKYKKEDTLVIVNMHWGVEYRETPTD-------YQTQFGHAILDAGADIIMGSHPHRLESVEK-YKDKYIVYSMGDFAFGADPTLLSRMTSMFQLRFTKEDNKIVLKDISIVPTYENSDGSTTENNYQPLPVFGDDAKKIVDELNRISKPIEGGVTEYTYFDPF |
| 3IVE Chain:A ((4-250)) | --------------------------------------------------------------------------------------------------------------------------------------------------------------AKDVTIIYTNDLHAHVEPYKVP------WIAD-GKRDIGGWANITTLVKQEK--AKNKATWFFDAGDYFTGPYISSLTKGKAIIDIMNTMPFDAVTIG-NHEFDHGWDNTLLQLS---QAKFPIVQGNIFYQNSSKSFWDKPYTIIEKDGVKIGVIGLHGVFAFNDTVSAATRVGIEARDEIKWLQRYIDELKGKVDLTVALIHEGVPARQSSM-DVRRALDKDIQTASQ--VKGLDILITGHAHVGTPEPIKVGNTLIL--------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3IVE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -26842 for 1658 contacts (-16.2/contact) +
2D Compatibility (PS) -22161 + (NN) -6051 + (LL) 16508
1D Compatibility (HY) -6400 + (ID) 1650
Total energy: -46596.0 ( -28.10 by residue)
QMean score : 0.308
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