Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MATQKNLVDLATKAYIYGFPFIFNTQQIERYVTVGIGGTKQVPFNNFTHASRLAEPSDKFVSVNNDTIYSNAPIDVSAGPVVLSVPDTSGRYYVLQFVDAWSNNFAYVGKRATGTSAGKFLLTPP--NWNGDVPADMIEIKFPTNIGIIIGRLACDGEADLPTVRELQEQLKITPLNEGK-----EVDGFPEYDRS-LGKE-LAFFEQLRVYMAQFPPAERDLVKQESFAPIGLMEKGVSPYSNPSEELKNALIEGAKAGLAN------IKKATTNFKSENGW--GLTQHLFDYNADFFEIGTKKSLDWVIEDREEAYIIRAVSAITALWGNH----GYEAVYLMTWTDTDGNALNGKNKYTLELNPIPPVDSFWSITMYDLPEYFLCENPINRYSIGDRTPGIQYNDDGGITIVVSKDEPTDPKERANWLPA-PDAEFRPMFRLYNPQQPLVDGSYHFPGFEKK |
| 3VB9 Chain:A ((119-474)) | -----------------------------------------------------------------------------TGPLIINLPEAKMAGMMLDVHQRVLSDLSLLG--PDKGKGGKYLIVPPGEKYKDLNPKGYYVIRPKTNV-VYGGIRILEPDVDR-VVKQVVPNITTQPYADGKLGRKIPVAQVPEIDWTHIPKDGLEYWKTIHQIIQENPVEERDRFVMAQLKFLGI-EKG-KPF-NPTEEQKKILLEASKVGRAMAQSNDYTKRFTQPYWKGTNWKDAISVSLDQRSENYDELDERAA--WFYE------------AITVSRGMKSTIPGFGQRYLVTYQDSDGNWLSGEHTYKLHVPANVPASNFWSTTVYDENNRLMIINDAGSPDISSRK-NLKVNSDGSIDVYYGP-KPVKGYEN-NWVQTNPGEGWFTYFRFYGPTEKMFDKSW-------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VB9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -86780 for 2322 contacts (-37.4/contact) +
2D Compatibility (PS) -36810 + (NN) -24974 + (LL) 6392
1D Compatibility (HY) -24000 + (ID) 4650
Total energy: -170822.0 ( -73.57 by residue)
QMean score : 0.397
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