Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNRRERRKHKRRKNMIIVLSTVFLMFIATSWMIYEFKSKQEQTVSAPTKKKAATATNPSENAATNEPEETKDPEPVEEKPKETIVKNQEIDNYLQKIGFSGSALVVRDGETIIQKGYMYANRDDKVLNTPDTLFYIGSSQKAIIATALLQLEEKGKINTNDPISKYIPDFPNGNKILVKNFMNHTSGIVGRPN-LTSNMTP------------DQIVKAIEKRGIKSQPG-KWDYMDANYTVVGYLVEKISGQPLATYLQENIFNPAGMKHTGYYQKDVDGGKNVSTGYKI-DENGVFQSPKLADLTK-----LYGAGDISMSTTDMYLFDKALMDKKLISEASLKKM---FTKGSKSTYGMGFY-----VDPGSYNSHGVVTGWDVSNSFSHTGRTYVILFSNVQNYIASFGKVNNDIYGFLNK |
| 1CEF Chain:A ((22-329)) | -------------------------------------------------------------------------------------------------GAPGAMVRVDDNGTIHQLSEGVADRATGRAITTTDRFRVGSVTKSFSAVVLLQLVDEGKLDLDASVNTYLPGLLPDDRITVRQVMSHRSGLYDYTNDMFAQTVPGFESVRNKVFSYQDLITLSLKHGVTNAPGAAYSYSNTNFVVAGMLIEKLTGHSVATEYQNRIFTPLNLTDTFYVHPDTVIPGTHANGYLTPDEAG----GALVDSTEQTVSWAQSAGAVISSTQDLDTFFSALMSGQLMSAAQLAQMQQWTTVNSTQGYGLGLRRRDLSCGISVYGHTGTVQGYYTYAFASKDGKRSVTALANTSNNV---------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1CEF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -118281 for 2400 contacts (-49.3/contact) +
2D Compatibility (PS) -31457 + (NN) -25366 + (LL) 8400
1D Compatibility (HY) -10400 + (ID) 4400
Total energy: -181504.0 ( -75.63 by residue)
QMean score : 0.544
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