Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MKRSWPDFAAFLLTILTVTWIILT-----WGLHISDIVPGGEKGI--------WYKLIPLFL--GIISTISVFFVKEKLVKWILLGFNILLLILIYFVYHIGEIGMF------------
1BM9 Chain:A ((3-122))
EEKRSSTGFLVKQRAFLKLYMITMTEQERLYGLKLLEVLRSEFKEIGFKPNHTEVYRSLHELLDDGILKQIKVKKEGAKLQEVVLYQFKDYEAAKLYKKQLKVELDRCKKLIEKALSDNF
General information:
TITO was launched using:
RESULT:
Template:
1BM9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85903 for 532 contacts (-161.5/contact) +
2D Compatibility (PS) -9478 + (NN) 1446 + (LL) 0
1D Compatibility (HY) -4400 + (ID) 1150
Total energy: -99485.0 ( -187.00 by residue)
QMean score : 0.197
(partial model without unconserved sides chains):
PDB file :
Tito_1BM9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BM9-query.scw
PDB file :
Tito_Scwrl_1BM9.pdb
: