Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VANKFKTLDKMVYNLLLEKIKNGELVPNEHLAEEKLAREFGVSRSPLRKAIATLTAQGIVSYHENSGAVLNDCIVDADRYVQLMETIEIFVDAAIAKAAHFGYEMDLEKLYARMQEMERFSYLTDLENYFDAHHRFILCLISFAENPYQVRIVKQIFFQMVHFSDGINMFKSVEIREWTNKKSNQIYELLAEGKIELARKTIKSMFAELTIQAYR
3C7J Chain:A ((22-225))
--PPAHLARTVIEEKLRNAIIDGSLPSGTALRQQELATLFGVSRMPVREALRQLEAQSLLRVETHKGAVVAPL--ITEDAVDAYALRILLESEALRLSIPLLDADDLAAAASYIEQLEV---ETDFGQIGRLNRMFHLSLYAKTHNKRLMRLVEEGLNEEERFLRFN--LSSMGLGKLSQDDHWQLLRLAEQKAVEPCVEALQYHLNRGVQAV--
General information:
TITO was launched using:
RESULT:
Template:
3C7J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -127577 for 1460 contacts (-87.4/contact) +
2D Compatibility (PS) -22526 + (NN) -13640 + (LL) 1248
1D Compatibility (HY) -7200 + (ID) 1950
Total energy: -171645.0 ( -117.57 by residue)
QMean score : 0.679
(partial model without unconserved sides chains):
PDB file :
Tito_3C7J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3C7J-query.scw
PDB file :
Tito_Scwrl_3C7J.pdb
: