Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----------MKPIFAVGDVHGEITLLDELLEN--WDKERERLLFVGDLIDRGENPAAVLRRVKALADQTGAIVLKGNHEQMLLDFLENPSGKMHYYLSQGGMETIQSLIADSLDKKMTPEGLAKRVKEEASELIDFIRKLP----LYYEEGKYVFVHAGVDLTK-KDWHDTEERDFFWIREPFLFGQNKTGK------VFIFGHTPVQNLHIDESSGIWVSEDKTRLDIDGGAVFGGELHGVVVEEKVITKSFSVKK
1G5B Chain:A ((1-219))
MRYYEKIDGSKYRNIWVVGDLHGCYTNLMNKLDTIGFDNKKDLLISVGDLVDRGAENVECLELIT----FPWFRAVRGNHEQMMIDGLSERGNVNHWL--LNGGGWFFNL--------------DYDKEILAKALAHKADELPLIIELVSKDKKYVICHADYPFDEYEFGKPVDHQQVIWNRERISNSQNGIVKEIKGADTFIFGHTPAVKPLKFAN----------QMYIDTGAVFCGNLTLIQVQGA----------
General information:
TITO was launched using:
RESULT:
Template:
1G5B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110117 for 1540 contacts (-71.5/contact) +
2D Compatibility (PS) -20917 + (NN) -7427 + (LL) 2612
1D Compatibility (HY) -11200 + (ID) 3100
Total energy: -150149.0 ( -97.50 by residue)
QMean score : 0.517
(partial model without unconserved sides chains):
PDB file :
Tito_1G5B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1G5B-query.scw
PDB file :
Tito_Scwrl_1G5B.pdb
: