Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEEKGILLQSGTNELEIVTFTVGENLFCINVLKVKEIIHPLEVTPVPDSNPAIEGVSQVRGEIMPVVNLARVMKLPEIEPENTKFIITELNQMKIVFRVDEVHRIQRISWEQIEEPEKLSIGLEELAVGIVKLDGNLVLLLDYEKIIYEISGNADFAVTGEDRIARKVNREEKTIFIAEDSQMLRQLLEDTLHEAGYTNLQFFANGREAQEHIFKLLKEQKEQTFENVNLLITDIEMPQMDGHHLTKVIKEDEIGRELPVVIFSSLITEDLEHKGAGVGADAQVSKPNIHQLINILDELVL
4JPB Chain:W ((12-150))
------------LKEFEVLSFEIDEQALAFDVDNIEMVIEKSDITPVPKSRHFVEGVINLRGRIIPVVNLAKILGISFDEQKMKSIIVARTKDVEVGFLVDRVLGVLRITENQL-DLTNVSDKFGKKSKGLVKTDGRLIIYLDIDKIIEEIT------------------------------------------------------------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4JPB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -124646 for 1018 contacts (-122.4/contact) +
2D Compatibility (PS) -15156 + (NN) -3187 + (LL) 12720
1D Compatibility (HY) -14000 + (ID) 2300
Total energy: -146569.0 ( -143.98 by residue)
QMean score : 0.628
(partial model without unconserved sides chains):
PDB file :
Tito_4JPB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JPB-query.scw
PDB file :
Tito_Scwrl_4JPB.pdb
: