Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIAIGNDHVGIELKPVIVAYLQDLGHEVDDFGAFSNERTDYPEYGKKVAESVAAGKSDLGILICGSGVGISIAANKVNGIRAVVCSEPYSAKLSREHNNTNILAFGSRVVGAELAKMIVQNWLDAEFEGGRHAKRVEMIARIEDEND
2VVR Chain:A ((2-147))
KKIAFGCDHVGFILKHEIVAHLVERGVEVIDKGTWSSERTDYPHYASQVALAVAGGEVDGGILICGTGVGISIAANKFAGIRAVVCSEPYSAQLSRQNNDTNVLAFGSRVVGLELAKMIVDAWLGAQYEGGRHQQRVEAITAIEQR--
General information:
TITO was launched using:
RESULT:
Template:
2VVR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87487 for 1198 contacts (-73.0/contact) +
2D Compatibility (PS) -16005 + (NN) -8001 + (LL) -156
1D Compatibility (HY) -14400 + (ID) 4900
Total energy: -130949.0 ( -109.31 by residue)
QMean score : 0.591
(partial model without unconserved sides chains):
PDB file :
Tito_2VVR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VVR-query.scw
PDB file :
Tito_Scwrl_2VVR.pdb
: