Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLVGNNIAKSYPNKLVLQNVDFEAKSGDMIVLTGENGSGKTTLLDMLASLKKPDSGTLEL--DNELFTTNDIRQQIAYLNNELYAKKSTTIEDFMKQHGLLF-----ENIELDKWDRLLAGWRINKRLKLGELSTGMLMKVKIGSVLARKAKLYLYDEPFASIDIMARSEVMKAIISETNPDAITI-ISSHHLEGTEKLYSKLWLIKDNTLQTIETETYREETGNALIDFYKEEMNK
1VPL Chain:A ((16-232))
-VVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRK-ILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTI--VETGTVEE----------------
General information:
TITO was launched using:
RESULT:
Template:
1VPL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -93200 for 1696 contacts (-55.0/contact) +
2D Compatibility (PS) -22012 + (NN) -3686 + (LL) 1564
1D Compatibility (HY) -15200 + (ID) 3050
Total energy: -135584.0 ( -79.94 by residue)
QMean score : 0.413
(partial model without unconserved sides chains):
PDB file :
Tito_1VPL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VPL-query.scw
PDB file :
Tito_Scwrl_1VPL.pdb
: